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===Basic/Evaluation===
===Basic/Evaluation===
The use of the plugin for basic analysis is as following. The walk-through is written for the RIR Quantification flow; if only Search/Match is wanted the evaluation flow has the same steps except the RIR part:
The walk-through below is written for the RIR Quantification flow. If only Search/Match is wanted the evaluation flow has the same steps except the RIR part.
*Load data:
'''The use of the plugin for basic analysis is as follows: '''
** Data from XRD Powder has to be converted to .asc or .xy before load.
#Load data:
*Peak evaluation:
## Data from XRD Powder has to be converted to .asc or .xy in advance.
**Choose the settings for the peak search and profile fitting
#Peak evaluation:
**Press Run
##Choose the settings for the peak search and profile fitting
*Phase identification:
##Press Run
**To search for the peaks, press Search/Match in the left window.  
#Phase identification:
**One of the best ways to limit the amount of data found is to use the element filter.
##To search for the peaks, press Search/Match in the left window.  
**Material can be set to unknown, not included, included, or include one at least by clicking on the materials several times.
##One of the best ways to limit the amount of data found is to use the element filter.
**When the material filters are set correctly press run to search the database (''see link above on how to add reference spectra to the database from the ICSD)''.
##"Material" can be set to unknown, not included, included, or include one at least by clicking on the materials several times.
**The found candidates are listed in Phase identification window. The candidate with the smallest FOM/F20 is the most likely candidate to be present in the sample.
##When the material filters are set correctly press "run" to search the database (''see link above on how to add reference spectra to the database from the ICSD)''.
**Always use the prior knowledge of the sample to evaluate the outcome of the search.
##The candidates found are listed in Phase identification window. The candidate with the smallest FOM/F20 is the most likely candidate to be present in the sample.
**The found results can be moved to the candidate phase list, for use in RIR quantification.
##Always use the prior knowledge of the sample to evaluate the outcome of the search.
**Press set above the candidate phase list before moving on.
##The identified phases can be moved to the candidate phase list, for use in RIR quantification.
##Press set above the candidate phase list before moving on.
 
===Basic/RIR Quantification===
===Basic/RIR Quantification===
For Reference Intensity Ratio (RIR) chose the RIR Quantification flow, which add the following step to basic evaluation.
For '''Reference Intensity Ratio (RIR) calculations''', choose the RIR Quantification flow, which adds the following step to basic evaluation.
*Configure RIR quantification:
#Configure RIR quantification:
**Chose the Miller indices to user for RIR.
##Chose the Miller indices to user for RIR.
**You can then right click on the dataset below the RIR Quantification window and click chart to see the distribution of the phases.
##You can then right-click on the dataset below the RIR Quantification window and click "chart" to see the distribution of the phases.
 
===Comprehensive Analysis/Crystallite size and strain===
For comprehensive analysis, in the task drop down menu in the flow bar select Comprehensive analysis. Three flows are available here, Crystallite size and strain, Lattice parameter refinement, and Crystallinity.  
For comprehensive analysis, in the task drop down menu in the flow bar select Comprehensive analysis. Three flows are available here, Crystallite size and strain, Lattice parameter refinement, and Crystallinity.  


===Comprehensive Analysis/Crystallite size and strain===
For Crystallite size and strain the first steps are the same as for Search/Match evaluation and the following is added:
For Crystallite size and strain the first steps are the same as for Search/Match evaluation and the following is added.
#Configure size & strain:
*Configure size & strain:
##Select the dataset to analyse.
**Select the dataset to analyse.
##Select or deselect peaks that are to be used or not for the calculation.
**Select or deselect peaks that are to be used or not for the calculation.
##Select the analysis method.
**Select the analysis method.
##Select 'Use e.s.d. for weight factor' (estimated standard deviation).
**Select 'Use e.s.d. for weight factor' (estimated standard deviation).
##Choose if width corrections is to be used.
**Chose if width corrections is to be used.
For more info on these see the manual by clicking ? in the right panel for the plugin (Crystallite Size and Strain, Lattice Parameter Refinement, or %Crystallinity) or in [http://labmanager.dtu.dk/view_binary.php?fileId=4247 LabManager]  - requires login


===Comprehensive Analysis/Lattice parameter refinement===
===Comprehensive Analysis/Lattice parameter refinement===
For Lattice parameter refinement, follow the steps for search and match. After phase identification do the following.
For '''lattice parameter refinement''', follow the steps for search and match. After phase identification do the following.
*Configure lattice parameter refinement:
#Configure lattice parameter refinement:
**Select the dataset to analyse.
##Select the dataset to analyse.
**Select or deselect peaks that are to be used or not for the calculation.
##Select or deselect peaks that are to be used or not for the calculation.
**Select the Angular correction to use.
##Select the angular correction to use.
For more info on these see the manual by clicking ? in the right panel for the plugin (Crystallite Size and Strain, Lattice Parameter Refinement, or %Crystallinity) or in [http://labmanager.dtu.dk/view_binary.php?fileId=4247 LabManager] - requires login


===Comprehensive Analysis/Crystallinity===
===Comprehensive Analysis/Crystallinity===
For crystallinity calculation, follow the steps for search and match. After phase identification the following steps are needed.
For '''crystallinity calculation''', follow the steps for search and match. After phase identification the following steps are needed.
*Confirm crystallinity:
#Confirm crystallinity:
**Decide whether to include background.
##Decide whether to include background.
**Chose if a line should be subtracted from background.
##Choose if a line should be subtracted from the background.
**Select the target crystalline phase.
##Select the target crystalline phase.
For more info on these see the manual by clicking ? in the right panel for the plugin (Crystallite Size and Strain, Lattice Parameter Refinement, or %Crystallinity) or in [http://labmanager.dtu.dk/view_binary.php?fileId=4247 LabManager] - requires login
 
For more info on these steps, see the manual by clicking ? in the right panel for the plugin (Crystallite Size and Strain, Lattice Parameter Refinement, or Crystallinity) or see [http://labmanager.dtu.dk/view_binary.php?fileId=4247 LabManager] - requires login


==Data Visualization==
==Data Visualization==